منابع مشابه
Mapping PDB chains to UniProtKB entries
MOTIVATION UniProtKB/SwissProt is the main resource for detailed annotations of protein sequences. This database provides a jumping-off point to many other resources through the links it provides. Among others, these include other primary databases, secondary databases, the Gene Ontology and OMIM. While a large number of links are provided to Protein Data Bank (PDB) files, obtaining a regularly...
متن کاملPDBsum: Structural summaries of PDB entries
PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB). The analyses are primarily image-based and include protein secondary structure, protein-ligand and protein-DNA interactions, PROCHECK analyses of structural quality, and many others. The 3D structures can be viewed interactively in RasMol, PyMOL, and a JavaScript viewer called 3Dmol.js. Users ...
متن کاملThe PDB-Preview database: a repository of in-silico models of 'on-hold' PDB entries
UNLABELLED The PDB-Preview database is a dynamic web repository of in-silico predicted three-dimensional (3D) models of experimentally determined structures that are deposited into the PDB but are not yet publicly released, and are kept 'on-hold'. The PDB-Preview database is automatically generated on a weekly basis by the bioinfo.pl meta-server, which uses top-of-the-line fold-recognition meth...
متن کاملMapping Lexical Entries in
This paper describes automatic techniques for mapping 9611 entries in a database of English verbs to WordNet senses. The verbs were initially grouped into 491 classes based on syntactic categories. Mapping these classiied verbs into WordNet senses provides a resource that may be used for disambiguation in multilingual applications such as machine translation and cross-language information retri...
متن کاملPDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB)
PDB-REPRDB is a database of representative protein chains from the Protein Data Bank (PDB). The previous version of PDB-REPRDB provided 48 representative sets, whose similarity criteria were predetermined, on the WWW. The current version is designed so that the user may obtain a quick selection of representative chains from PDB. The selection of representative chains can be dynamically configur...
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 2005
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/bti694